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Submitted URL: http://ssbd.riken.jp/
Effective URL: http://ssbd.riken.jp/database/
Submission: On November 28 via api from US — Scanned from JP

Form analysis 1 forms found in the DOM

<form class="form-inline justify-content-center">
  <div class="form-group"><label class="sr-only" for="id_key">Key</label><select name="key" class="form-control" title="" id="id_key">
      <optgroup label="Project search">
        <option value="project organism">Organism</option>
        <option value="project strain">Strain</option>
        <option value="project cell_line">Cell Line</option>
        <option value="project gene symbols">Gene Symbol</option>
        <option value="project protein names">Protein name</option>
        <option value="project protein tags">Protein tag</option>
        <option value="project reporter">Reporter</option>
        <option value="project project_id">Project ID</option>
        <option value="project dataset_id">Dataset ID</option>
        <option value="project title">Title</option>
        <option value="project description">Description</option>
        <option value="project datatype">Data Type</option>
        <option value="project gene_ontology">Gene Ontology</option>
        <option value="project fbbi">Biological Imaging Methods</option>
        <option value="project method">Method Summary</option>
        <option value="project paper">Paper Information</option>
        <option value="project mesh">Medical Subject Headlines</option>
        <option value="project person">Person</option>
      </optgroup>
      <optgroup label="Dataset search">
        <option value="dataset organism">Organism</option>
        <option value="dataset strain">Strain</option>
        <option value="dataset cell_line">Cell Line</option>
        <option value="dataset gene symbols">Gene Symbol</option>
        <option value="dataset protein names">Protein name</option>
        <option value="dataset protein tags">Protein tag</option>
        <option value="dataset reporter">Reporter</option>
        <option value="dataset project_id">Project ID</option>
        <option value="dataset dataset_id">Dataset ID</option>
        <option value="dataset title">Title</option>
        <option value="dataset description">Description</option>
        <option value="dataset datatype">Data Type</option>
        <option value="dataset gene_ontology">Gene Ontology</option>
        <option value="dataset fbbi">Biological Imaging Methods</option>
        <option value="dataset method">Method Summary</option>
        <option value="dataset paper">Paper Information</option>
        <option value="dataset mesh">Medical Subject Headlines</option>
        <option value="dataset person">Person</option>
      </optgroup>
    </select></div>
  <div class="form-group"><label class="sr-only" for="id_value">Value</label><input type="text" name="value" placeholder="ex. elegans" class="form-control" title="" id="id_value"></div>
  <button class="btn btn-outline-secondary" name="op" value="search">Search</button>
  <button class="btn btn-outline-secondary" name="op" value="clear">Clear</button>
</form>

Text Content

SSBD:DATABASE

Share your data
 * SSBD:repository
 * SSBD:database
 * Resources
 * SSBD:OMERO
 * Tools
 * Publications
 * About
 * News

Key Organism Strain Cell Line Gene Symbol Protein name Protein tag Reporter
Project ID Dataset ID Title Description Data Type Gene Ontology Biological
Imaging Methods Method Summary Paper Information Medical Subject Headlines
Person Organism Strain Cell Line Gene Symbol Protein name Protein tag Reporter
Project ID Dataset ID Title Description Data Type Gene Ontology Biological
Imaging Methods Method Summary Paper Information Medical Subject Headlines
Person
Value
Search Clear


INTRODUCTION

Systems Science of Biological Dynamics database (SSBD:database) is an
added-value database for biological dynamics. It provides a rich set of open
resources for analyzing quantitative data and microscopy images of biological
objects, such as single-molecule, cell, tissue, individual, etc., and software
tools for analysis. Quantitative biological data and microscopy images are
collected from a variety of species, sources, and methods. These include data
obtained from both experiments and computational simulations.

SSBD:database shares 197 projects, 20.9 TB, SSBD shares totally 240 projects,
31.1 TB (2023-11-28)

Find the dataset from the search box above, or see the dataset list on the
Resources.

See Citation Policies（PDF) for citation instructions.


SHARE YOUR DATA

SSBD:database shares selected, highly reusable bioimaging data and biodynamics
data. Our curators will invite to share the data from SSBD:repository and
accepted papers. Share youre data on SSBD:repository first, or send e-mail to
us.

Japanese / 日本語

Systems Science of Biological Dynamics database (SSBD:database)は、
生命動態に関する付加価値付きデータベース（added-value database）です。
本データベースは最先端の技術で取得した高品質の顕微鏡画像データとそれらの画像から画像解析技術を用いて取得した生命動態の定量データ、
計算機シミュレーションを用いて導出した生命科学の定量データ、 およびこれらのデータを解析するためのツールを収集し、共有します。
本データベースは、さまざまな生物種における一分子から細胞、組織、個体などの幅広い生命現象を対象としてます。

顕微鏡画像データ、生命動態の定量データをお探しの方は、ページ先頭の検索機能をご利用になるか、 Resourcesのリストをご参照ください。

データを再利用した際には、データの引用ポリシーCitation Policies（PDF)を確認のうえ、 適切な参照をお願いします。


データの共有について

SSBD:databaseでは、SSBD:repositoryや出版済み論文から、
キュレーターによって再利用性の高いバイオイメージングデータと生命動態データを選び出して共有しています。
まず、SSBD:repositoryでのデータの共有をご検討いただくか、 メールにてご相談下さい。


SAMPLES


MICROSCOPY IMAGES

Calcium response and shape changes in oocyte of C. elegans

DIC image of nuclear division dynamics in C. elegans embryo

TEM image of retinal tissue from human embryonic stem cells


QUANTITATIVE DATA

Nuclear division dynamics in D. rerio wild-type embryo

Nuclear division dynamics in C. elegans wild-type embryo

Single molecule dynamics in E. coli wild-type


NEWS

 * 2023-10-05,
   QtBD5Viewer upgrade
   
   
   We present an upgrade of the QtBD5Viewer software. This new version offers:
   - Visualize track paths described in the BD5 format.
   - Show objects and label names as a hierarchical tree. With this tree, the
   user can turn on/off individual objects. It also lets to define individual
   colors for labels. …

 * 2023-10-05,
   SSBD:database 2023 update
   
   
   We are pleased to announce the SSBD:database 2023 update,
   We released 29 projects, which include 2030 image datasets (1.7TB) and 168
   quantitative datasets (100GB).
   The added datasets have already been released and announced on
   http://x.com/ssbd_en
   
   The projects are
   214-Arata-BehavioralActivity, 219-Konishi-CalciumIonDyn,
   220-Imanishi-ROCKActivity,
   231-Asakura-ERKactivation, 237-Jin-CellDynamics, 244-Tokuoka-Embryogenesis,
   245-Hirasawa-OR-PAM, 246-Hung-CircadianRhythm, 247-Adhitama-Embryogenesis,
   253-Shimauchi-CalciumIonDyn, 254-Seita-GrowthDyn, 257-Kubota-ERKActivity, …

 * Older news...


FUNDING


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