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Research Article

INTELLIGENT ONTOLOGY ALIGNMENT TO IMPROVE SEMANTIC DATA INTEGRATION ACROSS
RESEARCH DOMAINS IN BIOMEDICINE

Muhammad Shoaib Malik, Esther Thea Inau



This is a preprint; it has not been peer reviewed by a journal.



https://doi.org/10.21203/rs.3.rs-3221032/v1

This work is licensed under a CC BY 4.0 License


STATUS:

Under Review






VERSION 1

posted 17 Aug, 2023

3

You are reading this latest preprint version


ABSTRACT



Ontology alignment is a key component of semantic web interoperability, with a
long history of applications in traditional data integration tasks that address
the problem of semantic heterogeneity. Ontology alignment tools take two
ontologiesas input and determine alignments as output i.e. a set of
correspondences between semantically related units of these ontologies. These
correspondences can then be used to merge ontologies, link data across knowledge
domains, answer semantic queries, navigate through knowledge graphs, and many
more. The process of determining alignments, called matching, therefore is a
basic requirement for linking knowledge across scientific domains covered by one
or more ontologies. A matching exists if entities from different ontologies are
semantically equivalent. The goal of this study is to find all semantically
equivalent entity pairs given a source ontology Os and a target ontology Ot,
each consisting of a set of entities. We propose to use Inverse Document
Frequency (IDF) and Jaccard distance to find candidate entities with high
precision and less computational effort. Our goal to cross-link different
research fields in the biomedical and clinical domains.

ontology alignment

semantic web

data integration

semantic heterogeneity


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STATUS:

Under Review






VERSION 1

posted 17 Aug, 2023



 * Editor assigned by journal
   
   13 Aug, 2023

 * Submission checks completed at journal
   
   13 Aug, 2023

 * First submitted to journal
   
   31 Jul, 2023

You are reading this latest preprint version


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